PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00738.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family MYB_related
Protein Properties Length: 293aa    MW: 32086.3 Da    PI: 6.6684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00738.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.3e-1299143347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar     Rt+ q+ s+ qky
        PK00738.1  99 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 143
                      8*****************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.61292148IPR017930Myb domain
SuperFamilySSF466897.18E-1794149IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-1995147IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.4E-1196142IPR009057Homeodomain-like
SMARTSM007178.0E-1196146IPR001005SANT/Myb domain
PfamPF002498.8E-1199143IPR001005SANT/Myb domain
CDDcd001671.88E-999144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MTRRCSYCCH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSHYAGS GSGALQGGPN  60
VPGSPGDTPD HGAAADGYAS EDFVPGSSSS CRERKKGVPW TEEEHRMFLL GLQKLGKGDW  120
RGIARNYVIS RTPTQVASHA QKYFIRQTNV SRRKRRSSLF DIIADEAADA SMVPRDFLSV  180
NHPQQEVQSD NTLPDPPALD EECESMDSTN SNDGEPAPPK LDNSPQSCYP VIYPAYISPF  240
FPYPVPVWSH YDNDTDVNKE THEVLKPTAV HSKSPINVDE LVGMSKLSLG ESX
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7515540.0FR751554.1 Humulus lupulus mRNA for myb transcription factor (myb4 gene), cultivar Osvald's 72, clone 3363.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448819.11e-178PREDICTED: transcription factor MYB1R1
TrEMBLG7ZLA30.0G7ZLA3_HUMLU; Myb transcription factor
STRINGGLYMA17G15330.11e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72303145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-131MYB_related family protein